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bvaldebenitom / SoloTE

GNU General Public License v3.0
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Re: TE file, score optional #15

Closed s2hui closed 1 year ago

s2hui commented 1 year ago

Hello,

Thank you for this very useful tool which I have just started to use on our single cell data. I had a question about file format for the TE annotation file.

The documentation says the format should be:

sequenceName startPosition endPosition sequenceName|startPosition|endPosition|TE_Subfamily:TE_Family:TE_Class|strand score(optional) .

If I don't have a score for the optional score column, do I omit this column entirely as well as the last column (i.e. strand)? Or should the score column be empty and the last column contain the strand?

Thanks very much for your help, @s2hui

bvaldebenitom commented 1 year ago

Hi @s2hui,

You can omit those columns. There shouldn't be any issue.

Best, Braulio.

s2hui commented 1 year ago

Thanks for clarifying and quick response!