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bvaldebenitom / SoloTE

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CellRanger bam file #6

Closed A1aNNN closed 1 year ago

A1aNNN commented 1 year ago

Thanks for the SoloTE tool! A question that I have is that I've been trying to run SoloTE on a bam file produced from CellRanger count, but I keep receiving this error message. Just wondering if you have any advice on how to resolve this as I believe that outSAMmultNmax is a parameter within STAR, and SoloTE should be able to take in bam files from both STARSolo and CellRanger.

Thanks in advance!

Screen Shot 2022-12-15 at 3 33 50 PM
bvaldebenitom commented 1 year ago

Hi @A1aNNN !

Thanks for the feedback. We have fixed this in release 1.03. Please see instructions here, as we updated the command line execution of SoloTE.

Please let us know if find any other issue.

wjbsb commented 1 year ago

Hello,

I have the same error in the 1.08 version but I used STARsolo v2.7.10b.

I updated the command line in the pipeline (line 110 to 114) and after it's worked.