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bvalot / pyMLST

whole genome MLST analysis
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Mycobacteria cgMLST Typing #16

Closed mweberr closed 1 year ago

mweberr commented 1 year ago

Hi, I am trying to reproduce the results from PubMLST Typing using cgMLST Mycobacteria sp. The wgMLST import seems to work fine but once I use wgMLST add, no results are returned.

The original result from pubmlst.org is : Closest profile cgST-12 Mismatches 21

How to improve the mapping ?

Best, Michael

bvalot commented 1 year ago

Hi,

cgMLST analysis is dedicated to performed differential analysis between strains to determined their closeness. After add your strains to the database, you must use other command to obtained comparison: wgMLST distance wgMLST mlst

mweberr commented 1 year ago

Thanks for your answer. I will try