problem downloading pyMLST

[aymericola]

Hi, I wanted to build a new MLST scheme and it seemed possible with pyMLST. Hence, I tried to download it using pip 22.0.2. (on Python 3.10) on Linux.

But I got the following error doing so.

`ERROR: Cannot install pymlst==2.0.1, pymlst==2.1.0, pymlst==2.1.1, pymlst==2.1.2 and pymlst==2.1.3 because these package versions have conflicting dependencies.

The conflict is caused by: pymlst 2.1.3 depends on questionary~=1.9.0 pymlst 2.1.2 depends on questionary~=1.9.0 pymlst 2.1.1 depends on questionary~=1.9.0 pymlst 2.1.0 depends on questionary~=1.9.0 pymlst 2.0.1 depends on questionary~=1.9.0

To fix this you could try to:

1. loosen the range of package versions you've specified
2. remove package versions to allow pip attempt to solve the dependency conflict ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts `

I went back to see the requirements.txt file. biopython>=1.78 click>=7.1 pytest>=6.2 sqlalchemy>=1.4,<2 networkx>=2.5 decorator>=4.4 requests>=2.23 pandas>=1.2 numpy>=1.20 beautifulsoup4>=4.9 questionary>=1.9 setuptools>=44.0 alembic>=1.6

It appears that questionary >=1.9 is required which I have (questionary-1.10.0). But there must be a conflict somewhere with other requirements, I can't seem to figure out which one. If someone can help me on this one, that'd be great.

[bvalot]

Hi,

Yes, the problems is link to older requirement file that was not compatible with python 3.10. I make correction on the github, but I not make a new pypi package yet.

You can try to install it with conda, that must works or manually in waiting that I make this new package