Clonal Complex and lineage in output

bvalot / pyMLST

whole genome MLST analysis

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Open valerievandervorst opened 3 months ago

valerievandervorst commented 3 months ago

Hi,

I was wondering if it is possible to also include the CC (clonal complex) and lineage in the claMLST output for Listeria?

Kind regards

bvalot commented 3 months ago

Hi,

Actually, CC and other element associated to ST were not store on the database and therefore could not be return. You can cross data with the profile of ST : https://bigsdb.pasteur.fr/api/db/pubmlst_listeria_seqdef/schemes/2/profiles_csv

Best regards,