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bvieth / powsimR

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
https://bvieth.github.io/powsimR/
Artistic License 2.0
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problem with evaluateDist function #14

Closed yoshiuva closed 6 years ago

yoshiuva commented 6 years ago

Dear Beate,

Could you give me the instruction to fix the following error? I tried your powsimR example code from the vignette. And when I was running the function evaluateDist, I got an error message. I am using R version 3.4.3 and Bioconductor version 3.6.

evaluateDist(cnts = kolodziejczk_cnts, RNAseq = "singlecell",

  • ncores = 1, nsims = 1, frac.genes = 1, min.meancount = 1,
  • min.libsize = 1000)

Error in evaluateDist(cnts = kolodziejczk_cnts, RNAseq = "singlecell", : could not find function "evaluateDist"

Thank you,

Yoshi

bvieth commented 6 years ago

Dear Yoshi,

for some time I excluded that function due to maintenance. Now it should be available again.

Kind regards Beate