Error : object ‘counts’ is not exported by 'namespace:scater'

bvieth / powsimR

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

https://bvieth.github.io/powsimR/

Artistic License 2.0

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Error : object ‘counts’ is not exported by 'namespace:scater' #5

Closed ttriche closed 6 years ago

ttriche commented 6 years ago

With both the release and devel versions of 'scater', it appears that powsimR cannot run. It turns out that scater imports "counts" from BiocGenerics, and thus namespacing it may be breaking things. See PR.

bvieth commented 6 years ago

Dear Tim, thank you for pointing this out! I pushed a new version with the suggested fix.

Kind regards Beate