Closed xuebaliang closed 4 years ago
Hello,
my apologies for answering so late. I turned off the github notifications since my email would have gotten flooded otherwise.
So concerning your question you can actually find the concentration tables and count matrices for the SCRBseq and Smartseq2 prepared cells in the folder simulation/ saved as rds files. There are no different cell types since they are all mouse embryonic stem cells.
Kind regards Beate
Hello, I have some trouble in finding the ERCC files of Ziegenhain dataset in paper <Comparative analysis of single-cell RNA sequencing methods>. It is likely not on GSE75790 in NCBI . Therefore can you send me it? I want to know the true concentration level of those ERCC genes. Another question is that whether you know the cell types(clusters) for these 583 cells. Thanks.