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bvilhjal / ldpred

MIT License
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ldpred score error 2 #101

Closed nandobonf closed 4 years ago

nandobonf commented 4 years ago

Dear authors, when I run ldpred score on a test genotype I get the following error message. Could you please help me fixing this? Thanks.

Calculating LDpred-inf risk scores
Parsing PLINK bed file: test.datasets/final.casecontrol
100.00%Traceback (most recent call last):
  File "/data/admin/NB.geno/ldpred/LDpred.py", line 300, in <module>
    main()
  File "/data/admin/NB.geno/ldpred/LDpred.py", line 293, in main
    validate.main(p_dict)
  File "/data/admin/NB.geno/ldpred/ldpred/validate.py", line 658, in main
    verbose=verbose, summary_dict=summary_dict)
  File "/data/admin/NB.geno/ldpred/ldpred/validate.py", line 412, in calc_risk_scores
    prs_dict = get_prs(bed_file, rs_id_map, phen_map, only_score=only_score, verbose=verbose)
  File "/data/admin/NB.geno/ldpred/ldpred/validate.py", line 148, in get_prs
    '\n'%(perc_missing*100)) 
TypeError: not all arguments converted during string formatting
bvilhjal commented 4 years ago

Thanks for the bug report..