I have with my group created a piece of software which we have been intending to use for the creation of polygenic risk scores from summary statistics by different means and I was in charge of the branch involving the use of LDpred.
When we actually wrote it it was several versions ago and it worked by directly calling the LDpred scripts within their directory on the command line.
E.g. It would go:
_>python ldpreddirectory/LDpred.py coord --args
Or "_python ldpreddirectory/LDpred.py gibbs --args" and so-on.
I therefore just have a quite basic, probably silly, question regarding usage of the package in its current state: would the package still work like this? And if so, which script is the overall "command" script?
Is it run.py?
I have with my group created a piece of software which we have been intending to use for the creation of polygenic risk scores from summary statistics by different means and I was in charge of the branch involving the use of LDpred. When we actually wrote it it was several versions ago and it worked by directly calling the LDpred scripts within their directory on the command line. E.g. It would go: _>python ldpreddirectory/LDpred.py coord --args Or "_python ldpreddirectory/LDpred.py gibbs --args" and so-on. I therefore just have a quite basic, probably silly, question regarding usage of the package in its current state: would the package still work like this? And if so, which script is the overall "command" script? Is it run.py?