Closed mvdbeek closed 4 years ago
I think this would be a better fix:
diff --git a/lib/bx/intervals/io.py b/lib/bx/intervals/io.py
index aedc720..1a3b6a8 100644
--- a/lib/bx/intervals/io.py
+++ b/lib/bx/intervals/io.py
@@ -207,8 +207,7 @@ class NiceReaderWrapper(GenomicIntervalReader):
GenomicIntervalReader.__init__(self, reader, **kwargs)
self.outstream = kwargs.get("outstream", None)
self.print_delegate = kwargs.get("print_delegate", None)
- self.input_wrapper = iter(self.input)
- self.input_iter = self.iterwrapper()
+ self.input_iter = iter(self.input)
self.skipped = 0
self.skipped_lines = []
@@ -229,11 +228,6 @@ class NiceReaderWrapper(GenomicIntervalReader):
if self.skipped < 10:
self.skipped_lines.append((self.linenum, self.current_line, str(e)))
- def iterwrapper(self):
- while True:
- self.current_line = next(self.input_wrapper)
- yield self.current_line
-
class BitsetSafeReaderWrapper(NiceReaderWrapper):
def __init__(self, reader, lens={}):
Should I push that to your branch?
sure!
@mvdbeek Need a new bx-python release?
that would be great!
Fixes #56