Improve maf handling - Githubissues

bxlab / bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

MIT License

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Improve maf handling #77

Closed lldelisle closed 2 years ago

lldelisle commented 3 years ago

I improved 'e' lines handling in maf. I added tests for main methods. (The two next parts have not been checked). I simplified some scripts to use method instead of external function I use parse_e_rows=True is much more scripts.

All comments are welcome

lldelisle commented 3 years ago

I think it is ready for review.

nsoranzo commented 3 years ago

I've fixed the issue in the "Deploy" CI jobs, if you want to rebase/merge the "main" branch.

lldelisle commented 3 years ago

Hi, All checks passed in case you have time to review.

lldelisle commented 2 years ago

Hi there, Still interested in this PR in case.

nsoranzo commented 2 years ago

@lldelisle Thanks again for the PR and sorry it took so long to merge, I guess at this point you are the person that knows more about this part of the code! Please let me know if:

you'd like a new release with this included
you are interested in joining the maintenance team of bx-python

lldelisle commented 2 years ago

Hi, Thanks for the merge.

Yes I would like a new release as I would like this to be included in the galaxy tool and in pyGenomeTracks.
If you think I can help, I would be happy to be part of the maintenance team.

nsoranzo commented 2 years ago

@lldelisle New bx-python 0.8.13 is out, and thanks for joining the maintenance team!

lldelisle commented 2 years ago

Thanks to you...