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bxlab / bx-python

Tools for manipulating biological data, particularly multiple sequence alignments
MIT License
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upgrading bx-python to newer versions of python #82

Closed adeslatt closed 2 years ago

adeslatt commented 2 years ago

Having some difficulty with dependencies in building a container for a package that depends upon bx-python. Incompatible versions of python -- package requires python 3.8.5 and bx-python 

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - bx-python -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0']

Your python: defaults/osx-64::python==3.8.5=h26836e1_1

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

Any chance for a fix ?

nsoranzo commented 2 years ago

Thanks for opening the issue. Since this is happening when installing bx-python via conda, the right place to open the issue is probably the repository for its conda recipe ( https://github.com/bioconda/bioconda-recipes/ I presume). Any way, can you please provide the conda command that caused the issue for you?