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bxlab / bx-python

Tools for manipulating biological data, particularly multiple sequence alignments
MIT License
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ERROR Missing dependencies: oldest-supported-numpy #88

Closed brobr closed 12 months ago

brobr commented 1 year ago

Hi, compiling from source breaks on the line

requires = ["cython", "oldest-supported-numpy", "setuptools", "wheel"]

in the 'pyproject.toml' when bx-python is compiled from source using

python3 -m build --no-isolation python3 -m installer -d "$PKG" dist/*.whl

Replacing "oldest-supported-numpy" with "numpy" makes it work.

nsoranzo commented 1 year ago

@brobr Thanks for reporting your issue, would you mind sharing what's the use case here? I've put a lot of effort in building ready-to-use wheels on PyPI for Python 3.7 to 3.11.

Secondarily, we'd need more information to reproduce the issue (e.g. Python version, operating system, a traceback). This works absolutely fine for me in a Python 3.8 virtual env on Ubuntu 20.04:

pip install build
python3 -m build
brobr commented 12 months ago

Hi; my excuses for the late response. "oldest-supported-numpy" as module does not work for Slackware64 when building from source. This because the wrong numpy-version (different from what is actually installed), is being 'taken as valid' by this module for Slackware64; so things go wrong.

Luckily, a simple edit of the toml file made it work.