Open pvanheus opened 8 years ago
Code implicated by this:
When linking .fastq.gz files as an admin, the linked files have extension .fastq which caused problems with tools natively supporting gzipped files. Adding the .gz again solved it. So admin upload/linking also needs to be looked at to verify it works with the new datatype
With the help of @dannon and @pvanheus , I made a little progress in fastq <-> fastq.gz conversion of existing datastets in the histories. I would like to know the PROS and CONS of these changes. You can find these changes in the following branch. https://github.com/ashvark/galaxy/tree/fastqCompression
TODO:
References https://github.com/galaxyproject/galaxy/pull/2535 https://www.e-biogenouest.org/wiki/ManArchiveGalaxy
Uncompressed fastq is a huge waste of disk space. So, a proposal:
As discussed with @ashvark and @dannon.