downstream analysis after functional annotation

bxlab / metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

MIT License

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downstream analysis after functional annotation #229

Open yjiakang opened 4 years ago

yjiakang commented 4 years ago

Hello, metawrap — really awesome tool it is. However, I have difficulty in doing downstream analysis to investigate complex questions about functional interactions and metabolic potential of individual community members. Is there any suggestions about it? Any pipelines or software can be helpful? I know some code like shell, python, R. Thanks in advance.

Jimaz commented 4 years ago

Hello, I would suggest using MinPath. It is written in Python and you can use PROKKA output to do so. Cheers, Jaime