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bxlab / metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MIT License
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output of bin_refinement #312

Open Biofarmer opened 3 years ago

Biofarmer commented 3 years ago

Hi, I am using version 1.3.1 of metawrap with the module of bin_refinement. I got the "BIN_REFINEMENT PIPELINE FINISHED SUCCESSFULLY!". Everything seems to be fine. However in the output, I noticed that there is a file named "binsA.stats", which seems to be moved from work_files folder (binsA.stats is missing in work_files), not copied from work_files and renamed to metabat2_bin.stats (set as -A in the command). The other files include .stats of maxbin2, concoct, and the metawrap_50_10_bins; four .contigs for maxbin2, metabat2, concoct, and the metawrap_50_10_bins. Based on the script, I think the binsA.stats should be copied and renamed, right? May I ask if the output is still fine for subsequent analysis or where is the problem? Thanks.

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MOVING OVER TEMPORARY FILES

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----- making completion and contamination ranking plots of final outputs -----

Loading completion info.... binsA.stats concoct_bins.stats maxbin2_bins.stats metawrap_50_10_bins.stats Plotting completion data... Loading contamination info... Plotting the contamination data... Saving figures binning_results.eps and binning_results.png ...

----- making contig membership files (for Anvio and other applications) -----

summarizing concoct_bins ... summarizing maxbin2_bins ... summarizing metabat2_bins ... summarizing metawrap_50_10_bins ...

########################################################################################################################

BIN_REFINEMENT PIPELINE FINISHED SUCCESSFULLY!

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Biofarmer commented 3 years ago

Update, I run the second sample, and the output is correct without binsA.stats but changed to the bin names specified in flag -A. However I do not know why the first sample is with the issue as mentioned above.