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bxlab / metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MIT License
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assembly issue: metaspades.py: command not found #414

Open hanareiaehau opened 2 years ago

hanareiaehau commented 2 years ago

Hi there,

I am trying to run the assembly step and keep getting an "command not found" error with lines that involve metaspades.py or metahit.py. I have checked the assembly.sh file and everything seems fine. I can't seem to figure out what the problem is.

Screen Shot 2021-12-05 at 1 41 28 PM
OlenaMaiakovska commented 1 year ago

Make sure you have executable metaspades in your system. That helped me to get it running. 

 sudo apt install spades