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bxlab / metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MIT License
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Please upgrade your scripts to python 3 #540

Open gdonval opened 6 months ago

gdonval commented 6 months ago

Python 2.7 was introduced 14 years ago and was EOLed 4 years ago. It is getting very hard to install metawrap and will get even harder when conda pulls the plug.

gdonval commented 6 months ago

image

This is the result of

  1. technical debt;
  2. forcing X.Y.Z version instead of X;
  3. forcing specific implementations (like mkl) down our throat instead of just writing documentation.
Gabelberg commented 5 months ago

I really second that. I, maybe for my faults, was not able to install metawrap in any of the metodology proposed. Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval? Thanks

zzzapperant commented 2 months ago

I really second that. I, maybe for my faults, was not able to install metawrap in any of the metodology proposed. Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval? Thanks

Maybe you can try conda install. I tried mamba install at first but failed.

yqy6611 commented 2 months ago

I really second that.

I, maybe for my faults, was not able to install metawrap in any of the metodology proposed.

Has anybody suggestions on how overcome error messages similar to the one posted by @gdonval?

Thanks

Release the restriction of python and install Prokka and salmon into single environments respectively. Definitely okay to install dependencies with python 3.