final_assembly.fasta empty

[kassammo]

Hi I am running the assembly using metaspades. Below the final lines from the log, I don't see any error. I am getting an empty file for the final_assembly.fasta. Which file should correspond to this file for the downstream analysis.

Thx

===== Assembling finished. Used k-mer sizes: 21, 33, 55

• Corrected reads are in ===== Assembling finished. Used k-mer sizes: 21, 33, 55

• Corrected reads are in Assembly/metaspades/corrected/

• Assembled contigs are in Assembly/metaspades/contigs.fasta

• Assembled scaffolds are in Assembly/metaspades/scaffolds.fasta

• Assembly graph is in Assembly/metaspades/assembly_graph.fastg

• Assembly graph in GFA format is in Assembly/metaspades/assembly_graph_with_scaffolds.gfa

• Paths in the assembly graph corresponding to the contigs are in Assembly/metaspades/contigs.paths

• Paths in the assembly graph corresponding to the scaffolds are in Assembly/metaspades/scaffolds.paths

======= SPAdes pipeline finished.

SPAdes log can be found here: Assembly/metaspades/spades.log

[ursky]

Strange. Is there nothing in Assembly/metaspades/scaffolds.fasta? If not, which files are there? Can you provide the complete log from Assembly/metaspades/spades.log?