bystrogenomics / bystro

High Dimensional Machine Learning Toolkit with applications in Genetics & Proteomics
Apache License 2.0
43 stars 16 forks source link

[api] Show progress bar during file stream or download #551

Closed akotlar closed 2 months ago

akotlar commented 2 months ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 months ago

Walkthrough

The recent updates enhance the file streaming functionality by setting a default chunk size of 10MB, improving data processing efficiency. The addition of the tqdm library introduces visual progress indicators for file output and data yielding, enriching user experience. Changes in the CLI also adjust output handling based on the specified directory and streamline error management, which may affect user interactions during data processing tasks.

Changes

Files Change Summary
.../api/streaming.py Updated stream_file to set a default chunk_size of 10MB; integrated tqdm for progress tracking during file streaming and output.
.../cli/cli.py Modified stream_file_cli to pass a write_stdout argument based on output directory; removed error handling in main function.
.../pyproject.toml Updated version from "2.0.0-beta14" to "2.0.0-beta15".

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant CLI
    participant Streamer
    participant Output

    User->>CLI: Invoke stream_file_cli
    CLI->>Streamer: Call stream_file with chunk_size
    Streamer->>Output: Write data in chunks with progress bar
    Output-->>User: Display progress

Poem

🌼 In the meadow, data streams,
Chunk by chunk, fulfilling dreams.
With progress bars, we hop along,
A joyful tale, a cheerful song.
Efficiency shines, oh what a delight,
As we dance with bytes, in morning light! 🐇✨


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