bystrogenomics / bystro

Natural Language Search and Analysis of High Dimensional Genomic Data
Mozilla Public License 2.0
44 stars 14 forks source link

Update MultiSNP for demo #556

Closed IlhaH closed 3 months ago

IlhaH commented 3 months ago

Summary by CodeRabbit

coderabbitai[bot] commented 3 months ago

Walkthrough

The recent changes enhance the Parent of Origin Effect (POE) estimation classes by introducing new parameters and attributes, refining the fitting process, and expanding documentation. Notably, the POESingleSNP class now includes additional attributes and parameters for p-value computation and bootstrap sampling. A new class, POEMultipleSNP2, enables simultaneous analysis of multiple SNPs, while updated tests ensure robustness for the new features.

Changes

File(s) Change Summary
python/python/bystro/parent_of_origin/*.py Enhanced POESingleSNP with new attributes and parameters; added POEMultipleSNP2 for multi-SNP fitting. Updated documentation for clarity.
python/python/bystro/parent_of_origin/tests/*.py Introduced test_multi2_fit to validate the new POEMultipleSNP2 class, enhancing test coverage.

Poem

In the meadow where data plays,
Changes bloom like sunny rays.
New models dance, fit with cheer,
With every SNP, the path is clear!
Hop along, let numbers sing,
In the world of stats, we leap and spring! 🐇✨


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