Closed IlhaH closed 3 months ago
The recent changes enhance the Parent of Origin Effect
(POE) estimation classes by introducing new parameters and attributes, refining the fitting process, and expanding documentation. Notably, the POESingleSNP
class now includes additional attributes and parameters for p-value computation and bootstrap sampling. A new class, POEMultipleSNP2
, enables simultaneous analysis of multiple SNPs, while updated tests ensure robustness for the new features.
File(s) | Change Summary |
---|---|
python/python/bystro/parent_of_origin/*.py |
Enhanced POESingleSNP with new attributes and parameters; added POEMultipleSNP2 for multi-SNP fitting. Updated documentation for clarity. |
python/python/bystro/parent_of_origin/tests/*.py |
Introduced test_multi2_fit to validate the new POEMultipleSNP2 class, enhancing test coverage. |
In the meadow where data plays,
Changes bloom like sunny rays.
New models dance, fit with cheer,
With every SNP, the path is clear!
Hop along, let numbers sing,
In the world of stats, we leap and spring! 🐇✨
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Summary by CodeRabbit
New Features
POEMultipleSNP2
, for simultaneous analysis of multiple SNPs.transform
method inPOEMultipleSNP2
.Bug Fixes
fit
method.Tests
POEMultipleSNP2
model.