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bzhanglab / COSMO

COSMO: COrrection of Sample Mislabeling by Omics
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Python and docker fixes #6

Closed robsyme closed 1 year ago

robsyme commented 1 year ago

Hi COSMO authors

At the moment, I don't think there is a way of users knowing what software is being loaded inside the Docker container used to run each of the COSMO tasks. Included in this PR is a minimal Dockerfile that can be used to build an image suitable for the docker tasks.

Also included is a change to use the python script bundled in this repository rather than the docker image for the method 2 process.

toddcreasy commented 1 year ago

Hi COSMO authors,

I was wondering if you had a timeline where this might get merged. This is causing a few errors with our nextflow tower pipeline.

Thanks!

-todd

drpatelh commented 1 year ago

Please close this PR and merge https://github.com/bzhanglab/COSMO/pull/7 instead. All changes here have been added there.

zhiaos commented 1 year ago

Changes have been included in #7