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bzhanglab / SEPepQuant

SEPepQuant: a graph theory-based approach enables comprehensive protein isoform characterization in shotgun proteomics
Apache License 2.0
3 stars 1 forks source link

alternatives to fragpipe #2

Open rsalz opened 1 year ago

rsalz commented 1 year ago

Nice tool! I would like to use it but do not want to use FragPipe. I have label free spectral identifications from Metamorpheus. Can I use Prophet and then use your tool somehow? Any suggestions? Thanks!

YongchaoDou commented 1 year ago

Thanks for your interesting in SEPepQuant. We are developing a new feature which only need a pre-formatted peptide level quantification table. We will let you know when the new feature is ready.

rsalz commented 1 year ago

Awesome, thanks! Even if it's in beta, I'm interested in testing it out for you. Let me know :)