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bzhanglab / WebGestaltR

R package for WebGestalt
https://bzhanglab.github.io/WebGestaltR/
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Error: Organism is missing. #26

Closed Charmander2010 closed 1 year ago

Charmander2010 commented 1 year ago

I have used WebGestaltR for ORA GO and KEGG enrichment, however it kept showing this error "Organism is missing." but I included the organism. Later I checked the internal error message and actually it is: "Error in idMappingGene(organism = organism, dataType = dataType, inputGeneFile = inputGeneFile, : Organism is missing."

I used this function yesterday and everything worked fine. Could you please check up and fix this issue?

yxngl commented 1 year ago

Hi, Can you check if you are using hostName = "https://www.webgestalt.org" ?

On Fri, May 26, 2023 at 1:00 AM Li Hankun @.***> wrote:

I have used WebGestaltR for ORA GO and KEGG enrichment, however it kept showing this error "Organism is missing." but I included the organism. Later I checked the internal error message and actually it is: "Error in idMappingGene(organism = organism, dataType = dataType, inputGeneFile = inputGeneFile, : Organism is missing."

I used this function yesterday and everything worked fine. Could you please check up and fix this issue?

— Reply to this email directly, view it on GitHub https://github.com/bzhanglab/WebGestaltR/issues/26, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAM6IVP4545YN6WF6GP67OTXIBBJTANCNFSM6AAAAAAYPYMXRA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

Charmander2010 commented 1 year ago

Hi, Can you check if you are using hostName = "[https://www.webgestalt.org"](https://www.webgestalt.org%22%60) ? … On Fri, May 26, 2023 at 1:00 AM Li Hankun @.> wrote: I have used WebGestaltR for ORA GO and KEGG enrichment, however it kept showing this error "Organism is missing." but I included the organism. Later I checked the internal error message and actually it is: "Error in idMappingGene(organism = organism, dataType = dataType, inputGeneFile = inputGeneFile, : Organism is missing." I used this function yesterday and everything worked fine. Could you please check up and fix this issue? — Reply to this email directly, view it on GitHub <#26>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAM6IVP4545YN6WF6GP67OTXIBBJTANCNFSM6AAAAAAYPYMXRA . You are receiving this because you are subscribed to this thread.Message ID: @.>

Thank you. I have updated the package to 0.4.5 and the issue was fixed. I will try to add this hostName in next time if I have the same issue again.