bzhanglab neoflow issues - Githubissues

bzhanglab / neoflow

NeoFlow: a proteogenomics pipeline for neoantigen discovery

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error with demo in STEP2: calculate_fdr

#11 zhanglixixi opened 7 months ago
0
add spaces to parameters for comet

#10 iblacksand closed 1 year ago
2
Error with demo in STEP2: executing process > 'msms_searching (spec-00139.mgf)'

#9 Sawakotx opened 1 year ago
3
No output was generated after module 4 finished

#8 WLYYYYY opened 1 year ago
1
neoflow_db.nf doesn't allow not outputting reference protein sequences

#7 zhuchcn opened 1 year ago
0
bioconductor updated yet neoflow keeps showing update error

#6 jiwonhong95 opened 2 years ago
3
variant identification step with --pv_fixmod parameters

#5 jiwonhong95 closed 2 years ago
2
Exception in thread "Task submitter" java.lang.NumberFormatException: For input string: "null"

#4 EnHu359 opened 2 years ago
2
Error with demo data when running STEP2

#3 biosunsci opened 2 years ago
7
FATAL: could not open image 10158:10011: failed to retrieve path for 10158:10011: lstat

#2 Jokendo-collab opened 4 years ago
0
Process `pre_processing (test_vcf_files.tsv)` terminated with an error exit status (255)

#1 Jokendo-collab opened 4 years ago
0