Error when I try to use this package

c-guzman / cipher-workflow-platform

A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.

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Error when I try to use this package #1

Closed bioinfo-dirty-jobs closed 7 years ago

bioinfo-dirty-jobs commented 7 years ago

I try to use this recipe. This is the error when I try to install singularity:

Python 2.7.13 :: Continuum Analytics, Inc.
creating default environment...
installation finished.
+ /opt/anaconda2/bin/conda install -c r r-base=3.3.2 r-essentials=1.5.2 r-devtools=1.12.0
Fetching package metadata .......
CondaIndexError: Invalid index file: https://repo.continuum.io/pkgs/r/linux-64/repodata.json.bz2: couldn't find end of stream

ABORT: Aborting with RETVAL=255

c-guzman commented 7 years ago

Interesting, i've never run into this error message before.

What OS are you using, and are you behind a proxy?

bioinfo-dirty-jobs commented 7 years ago

I use ubuntu16. It is only for trial purpose then I move on RHEL 5.5

c-guzman commented 7 years ago

Were you able to install Singularity without any trouble? Can you post the exact command you used to generate this error?

bioinfo-dirty-jobs commented 7 years ago

I use the command :

sudo singularity create -s 8000 cipher.img

sudo singularity bootstrap cipher.img Singularity

After 3 times nw seem installed . I don't change nothing!!

c-guzman commented 7 years ago

Wait are you saying it worked now?

That's very strange. I am not able to recreate this on my ubuntu 16.04 machine.

bioinfo-dirty-jobs commented 7 years ago

Yes now worked..!! maybe it was a problem with the connection!! thanks so much:

$ du -hs cipher.img 
6,7G    cipher.img

c-guzman commented 7 years ago

Great!