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c-proof / pyglider

glider software
https://pyglider.readthedocs.io/
Apache License 2.0
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pytest fails #162

Open jcermauwedu opened 3 months ago

jcermauwedu commented 3 months ago

The pytest currently fails. It looks like the raw data is there, but the test is not producing the parquet file. I am using the latest commit: https://github.com/c-proof/pyglider/commit/71c6e1309279ae39a74c17a6edcc4d6cf6a715ac

============================================================= test session starts ==============================================================
platform linux -- Python 3.12.2, pytest-8.1.1, pluggy-1.4.0
rootdir: /home/portal/src/pyglider
plugins: cov-4.1.0
collected 26 items / 1 error                                                                                                                   

==================================================================== ERRORS ====================================================================
___________________________________________________ ERROR collecting tests/test_pyglider.py ____________________________________________________
tests/test_pyglider.py:21: in <module>
    outname = seaexplorer.raw_to_L0timeseries(rawncdir, l0tsdir,
../upstream/pyglider/pyglider/seaexplorer.py:317: in raw_to_timeseries
    gli = pl.read_parquet(f'{indir}/{id}-rawgli.parquet')
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/_utils/deprecation.py:134: in wrapper
    return function(*args, **kwargs)
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/_utils/deprecation.py:134: in wrapper
    return function(*args, **kwargs)
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/io/parquet/functions.py:171: in read_parquet
    lf = scan_parquet(
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/_utils/deprecation.py:134: in wrapper
    return function(*args, **kwargs)
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/_utils/deprecation.py:134: in wrapper
    return function(*args, **kwargs)
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/io/parquet/functions.py:311: in scan_parquet
    return pl.LazyFrame._scan_parquet(
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/lazyframe/frame.py:458: in _scan_parquet
    scan = _scan_parquet_fsspec(source, storage_options)  # type: ignore[arg-type]
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/io/parquet/anonymous_scan.py:21: in _scan_parquet_fsspec
    schema = polars.io.parquet.read_parquet_schema(data)
../../miniconda3/envs/pyglider/lib/python3.12/site-packages/polars/io/parquet/functions.py:213: in read_parquet_schema
    return _read_parquet_schema(source)
E   FileNotFoundError: No such file or directory (os error 2): ...yglider/tests/example-data/example-seaexplorer/realtime_rawnc//dfo-eva035-rawgli.parquet
=========================================================== short test summary info ============================================================
ERROR tests/test_pyglider.py - FileNotFoundError: No such file or directory (os error 2): ...yglider/tests/example-data/example-seaexplorer/realtime_rawnc//dfo-eva035-raw...
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
=============================================================== 1 error in 3.86s ===============================================================
jklymak commented 3 months ago

Do you have polars installed?

jcermauwedu commented 3 months ago

I appear to have it in my environment.

$ conda list | grep polars
polars                    0.20.16         py312h21dbfff_0    conda-forge