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Segmentation fault when running the RQA trend analysis on a north american tile #24

Open felixcremer opened 1 year ago

felixcremer commented 1 year ago

This is the segfault I get:

length(filenames) = 1694
onecube.axes = RangeAxis{Float64, S, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}} where S[X                   Axis with 15000 Elements from 8.4e6 to 8.69998e6
, Y                   Axis with 15000 Elements from 2.7e6 to 2.40002e6]
  5.142771 seconds (4.14 M allocations: 274.726 MiB, 4.93% gc time, 82.46% compilation time)
Doing the RQA computation:
End of the processing of VH, A, EQUI7_NA020M_E084N024T3, 2018: 2023-05-17T10:52:02.716
Doing the RQA computation:
path = "/eodc/private/pangeojulia/systematic/EQUI7_NA020M_E084N024T3_rqatrend_VH_A_thresh_3_year_2016"
Start of the processing: 2023-05-17T10:52:04.975 
Progress:  96%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▋       |  ETA: 0:00:09Worker 9 
terminated.
Unhandled Task ERROR: EOFError: read end of file 
Stacktrace:
 [1] (::Base.var"#wait_locked#715")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64)
   @ Base ./stream.jl:947
 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64)
   @ Base ./stream.jl:955
 [3] unsafe_read
   @ ./io.jl:761 [inlined]
 [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64)
   @ Base ./io.jl:760
 [5] read!
   @ ./io.jl:762 [inlined]
 [6] deserialize_hdr_raw
   @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/messages.jl:167 [inlined]
 [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool)
   @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/process_messages.jl:172
 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool)
   @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/process_messages.jl:133
 [9] (::Distributed.var"#103#104"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})()
   @ Distributed ./task.jl:514
ERROR: LoadError: ProcessExitedException(9)
Stacktrace:
  [1] try_yieldto(undo::typeof(Base.ensure_rescheduled))
    @ Base ./task.jl:920
  [2] wait()
ssssssssssssssssssssssssssssss
    @ Base ./task.jl:984
  [3] wait(c::Base.GenericCondition{ReentrantLock}; first::Bool)
    @ Base ./condition.jl:130
  [4] wait
    @ ./condition.jl:125 [inlined]
  [5] take_buffered(c::Channel{Any})
    @ Base ./channels.jl:456
  [6] take!(c::Channel{Any})
    @ Base ./channels.jl:450
  [7] take!(::Distributed.RemoteValue)
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/remotecall.jl:726
  [8] remotecall_fetch(::Function, ::Distributed.Worker, ::RemoteChannel{Channel{Any}}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/remotecall.jl:461
  [9] remotecall_fetch(::Function, ::Distributed.Worker, ::RemoteChannel{Channel{Any}}, ::Vararg{Any})
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/remotecall.jl:454
 [10] remotecall_fetch(::Function, ::Int64, ::RemoteChannel{Channel{Any}}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/remotecall.jl:492
 [11] remotecall_fetch(::Function, ::Int64, ::RemoteChannel{Channel{Any}}, ::Vararg{Any})
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/remotecall.jl:492
 [12] remotecall_pool(rc_f::Function, f::Function, pool::CachingPool, args::Tuple{UnitRange{Int64}, UnitRange{Int64}}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:366
 [13] remotecall_pool
    @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:360 [inlined]
 [14] #remotecall_fetch#200
    @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:232 [inlined]
 [15] remotecall_fetch
    @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:232 [inlined]
 [16] #208#209
    @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:288 [inlined]
 [17] #208
    @ ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/workerpool.jl:288 [inlined]
 [18] (::Base.var"#978#983"{Distributed.var"#208#210"{Distributed.var"#208#209#211"{CachingPool, Distributed.var"#238#239"{Bool, ProgressMeter.var"#56#59"{RemoteChannel{Channel{Bool}}, YAXArrays.DAT.var"#103#107"{YAXArrays.DAT.DATConfig{1, 1}}}, typeof(identity)}}}})(r::Base.RefValue{Any}, args::Tuple{Tuple{UnitRange{Int64}, UnitRange{Int64}}})
    @ Base ./asyncmap.jl:100
 [19] macro expansion
    @ ./asyncmap.jl:234 [inlined]
 [20] (::Base.var"#994#995"{Base.var"#978#983"{Distributed.var"#208#210"{Distributed.var"#208#209#211"{CachingPool, Distributed.var"#238#239"{Bool, ProgressMeter.var"#56#59"{RemoteChannel{Channel{Bool}}, YAXArrays.DAT.var"#103#107"{YAXArrays.DAT.DATConfig{1, 1}}}, typeof(identity)}}}}, Channel{Any}, Nothing})()
    @ Base ./task.jl:514
Stacktrace:
  [1] (::Base.var"#988#990")(x::Task)
    @ Base ./asyncmap.jl:177
  [2] foreach(f::Base.var"#988#990", itr::Vector{Any})
    @ Base ./abstractarray.jl:3073
  [3] maptwice(wrapped_f::Function, chnl::Channel{Any}, worker_tasks::Vector{Any}, c::DiskArrays.GridChunks{2})
    @ Base ./asyncmap.jl:177
  [4] wrap_n_exec_twice
    @ ./asyncmap.jl:153 [inlined]
  [5] #async_usemap#973
    @ ./asyncmap.jl:103 [inlined]
  [6] async_usemap
    @ ./asyncmap.jl:84 [inlined]
  [7] #asyncmap#972
    @ ./asyncmap.jl:81 [inlined]
  [8] asyncmap

    @ ./asyncmap.jl:80 [inlined]
  [9] pmap(f::Function, p::CachingPool, c::DiskArrays.GridChunks{2}; distributed::Bool, batch_size::Int64, on_error::Function, retry_delays::Vector{Any}, retry_check::Nothing)
    @ Distributed ~/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/share/julia/stdlib/v1.9/Distributed/src/pmap.jl:126
 [10] macro expansion
    @ ~/.julia/packages/ProgressMeter/sN2xr/src/ProgressMeter.jl:1015 [inlined]
 [11] macro expansion
    @ ./task.jl:476 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/ProgressMeter/sN2xr/src/ProgressMeter.jl:1014 [inlined]
 [13] macro expansion
    @ ./task.jl:476 [inlined]
 [14] progress_map(::Function, ::Vararg{Any}; mapfun::Function, progress::ProgressMeter.Progress, channel_bufflen::Int64, kwargs::Base.Pairs{Symbol, typeof(identity), Tuple{Symbol}, NamedTuple{(:on_error,), Tuple{typeof(identity)}}})
    @ ProgressMeter ~/.julia/packages/ProgressMeter/sN2xr/src/ProgressMeter.jl:1007
 [15] #progress_pmap#60
    @ ~/.julia/packages/ProgressMeter/sN2xr/src/ProgressMeter.jl:1032 [inlined]
 [16] progress_pmap
    @ ~/.julia/packages/ProgressMeter/sN2xr/src/ProgressMeter.jl:1032 [inlined]
 [17] runLoop(dc::YAXArrays.DAT.DATConfig{1, 1}, showprog::Bool)
    @ YAXArrays.DAT ~/.julia/dev/YAXArrays/src/DAT/DAT.jl:709
 [18] mapCube(fu::typeof(RQADeforestation.rqatrend), cdata::Tuple{YAXArray{Union{Missing, Float16}, 3, DiskArrays.SubDiskArray{Union{Missing, Float16}, 3}, Vector{CubeAxis}}}, addargs::Int64; max_cache::Float64, indims::InDims, outdims::OutDims, inplace::Bool, ispar::Bool, debug::Bool, include_loopvars::Bool, showprog::Bool, irregular_loopranges::Bool, nthreads::Dict{Int64, Int64}, loopchunksize::Dict{Any, Any}, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ YAXArrays.DAT ~/.julia/dev/YAXArrays/src/DAT/DAT.jl:479
 [19] #mapCube#36
    @ ~/.julia/dev/YAXArrays/src/DAT/DAT.jl:307 [inlined]
 [20] mapCube
    @ ~/.julia/dev/YAXArrays/src/DAT/DAT.jl:307 [inlined]
 [21] #rqatrend#10
    @ ~/RQADeforestation/src/analysis.jl:56 [inlined]
 [22] rqatrend
    @ ~/RQADeforestation/src/analysis.jl:55 [inlined]
 [23] macro expansion
    @ ./timing.jl:273 [inlined]
 [24] (::var"#4#7"{Int64, YAXArray{Union{Missing, Float16}, 3, DiskArrays.SubDiskArray{Union{Missing, Float16}, 3}, Vector{CubeAxis}}, String})()
    @ Main ~/RQADeforestation/scripts/all_rqatrend.jl:118
 [25] (::Base.RedirectStdStream)(thunk::var"#4#7"{Int64, YAXArray{Union{Missing, Float16}, 3, DiskArrays.SubDiskArray{Union{Missing, Float16}, 3}, Vector{CubeAxis}}, String}, stream::IOStream)
    @ Base ./stream.jl:1429
 [26] main()
    @ Main ~/RQADeforestation/scripts/all_rqatrend.jl:117
 [27] top-level scope
    @ ~/RQADeforestation/scripts/all_rqatrend.jl:146
in expression starting at /home/ubuntu/RQADeforestation/scripts/all_rqatrend.jl:146
error: <inline asm>:1:2: invalid character in input
        ��

[522327] signal (11.128): Segmentation fault
in expression starting at none:0
free(): corrupted unsorted chunks

[522327] signal (6.-6): Aborted
in expression starting at none:0
unknown function (ip: 0x7ff4aed048a6)
exit at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)

_ZN4llvm11LLVMContext8diagnoseERKNS_14DiagnosticInfoE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZNSt17_Function_handlerIFvRKN4llvm12SMDiagnosticEbRKNS0_9SourceMgrERSt6vectorIPKNS0_6MDNodeESaISA_EEEZNS0_28MachineModuleInfoWrapperPass16doInitializationERNS0_6ModuleEEUlS3_bS6_SD_E_E9_M_invokeERKSt9_Any_dataS3_ObS6_SD_ at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm9MCContext8diagnoseERKNS_12SMDiagnosticE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN12_GLOBAL__N_19AsmParser11DiagHandlerERKN4llvm12SMDiagnosticEPv at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZNK4llvm9SourceMgr12PrintMessageERNS_11raw_ostreamENS_5SMLocENS0_8DiagKindERKNS_5TwineENS_8ArrayRefINS_7SMRangeEEENS8_INS_7SMFixItEEEb at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZNK4llvm9SourceMgr12PrintMessageENS_5SMLocENS0_8DiagKindERKNS_5TwineENS_8ArrayRefINS_7SMRangeEEENS6_INS_7SMFixItEEEb at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN12_GLOBAL__N_19AsmParser3RunEbb at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZNK4llvm10AsmPrinter13emitInlineAsmENS_9StringRefERKNS_15MCSubtargetInfoERKNS_15MCTargetOptionsEPKNS_6MDNodeENS_9InlineAsm10AsmDialectE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZNK4llvm10AsmPrinter13emitInlineAsmEPKNS_12MachineInstrE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm10AsmPrinter16emitFunctionBodyEv at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm13X86AsmPrinter20runOnMachineFunctionERNS_15MachineFunctionE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
operator() at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:1206
_ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
emit at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:631
_ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc19MaterializationTask3runEv at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EERKNS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISK_vEEEENSL_IS5_vEENS_6detail12DenseMapPairIS5_SN_EEEEEE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolStringPtrENS0_11SymbolStateE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS0_15SymbolStringPtrENS0_11SymbolStateE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS_9StringRefENS0_11SymbolStateE at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/bin/../lib/julia/libLLVM-14jl.so (unknown line)
addModule at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:1420
jl_add_to_ee at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:1815
_jl_compile_codeinst at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:241
jl_generate_fptr_impl at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/jitlayers.cpp:460
jl_compile_method_internal at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2348 [inlined]
jl_compile_method_internal at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2237
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2750 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
print at ./strings/io.jl:46
show at ./stream.jl:263 [inlined]
print at ./strings/io.jl:35
jfptr_print_28252.clone_1 at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
print_to_string at ./strings/io.jl:144
string at ./strings/io.jl:185 [inlined]
isopen at ./stream.jl:381 [inlined]
check_open at ./stream.jl:387 [inlined]
displaysize at ./stream.jl:569
jfptr_displaysize_41411.clone_1 at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
#handle_message#3 at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/usr/share/julia/stdlib/v1.9/Logging/src/ConsoleLogger.jl:124
handle_message at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/usr/share/julia/stdlib/v1.9/Logging/src/ConsoleLogger.jl:106
unknown function (ip: 0x7ff33c527851)
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
jl_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/julia.h:1879 [inlined]
jl_f__call_latest at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/builtins.c:774
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
jl_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/julia.h:1879 [inlined]
do_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/builtins.c:730
#invokelatest#2 at ./essentials.jl:818
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
jl_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/julia.h:1879 [inlined]
do_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/builtins.c:730
invokelatest at ./essentials.jl:813
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
macro expansion at ./logging.jl:365 [inlined]
profile_printing_listener at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/usr/share/julia/stdlib/v1.9/Profile/src/Profile.jl:49
#3 at ./threadingconstructs.jl:373
jfptr_YY.3_59501.clone_1 at /home/ubuntu/.julia/juliaup/julia-1.9.0+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2758 [inlined]
ijl_apply_generic at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/gf.c:2940
jl_apply at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/julia.h:1879 [inlined]
start_task at /cache/build/default-amdci4-0/julialang/julia-release-1-dot-9/src/task.c:1092
Allocations: 57323662 (Pool: 57294833; Big: 28829); GC: 75
felixcremer commented 1 year ago

The segmentation fault only happens in julia 1.9 and not in 1.8 and also adding --heap-size-hint=200G does not help and the argument seems to be ignored.

felixcremer commented 1 year ago

I can't test it on julia nightly, because there I can't install the GDAL_jll because of some version mismatch between the libcurl from julia and the libcurl from GDAL_jll