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c-zhou / yahs

Yet another Hi-C scaffolding tool
MIT License
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In function ‘ks_seek’: no return statement in function returning non-void #31

Open dpaudel opened 2 years ago

dpaudel commented 2 years ago

Hello, I am trying to install yahs and it throws the following error. Can you please check? Thanks

In file included from sdict.c:38:
sdict.c: In function ‘ks_seek’:
kseq.h:42:17: warning: no return statement in function returning non-void [-Wreturn-type]
   42 |  typedef struct __kstream_t { \
      |                 ^~~~~~~~~~~
kseq.h:163:2: note: in expansion of macro ‘__KS_TYPE’
  163 |  __KS_TYPE(type_t) \
      |  ^~~~~~~~~
kseq.h:255:2: note: in expansion of macro ‘KSTREAM_INIT2’
  255 |  KSTREAM_INIT2(SCOPE, type_t, __read, __seek, 16384) \
      |  ^~~~~~~~~~~~~
kseq.h:260:43: note: in expansion of macro ‘KSEQ_INIT2’
  260 | #define KSEQ_INIT(type_t, __read, __seek) KSEQ_INIT2(static, type_t, __read, __seek)
      |                                           ^~~~~~~~~~
sdict.c:42:1: note: in expansion of macro ‘KSEQ_INIT’
   42 | KSEQ_INIT(gzFile, gzread, gzseek)
      | ^~~~~~~~~
gcc -g -O0 -Wall -fno-strict-aliasing asset.c bamlite.c kalloc.c kopen.c sdict.c juicer.c -o juicer -L. -lm -lz
In file included from sdict.c:38:
sdict.c: In function ‘ks_seek’:
kseq.h:42:17: warning: no return statement in function returning non-void [-Wreturn-type]
   42 |  typedef struct __kstream_t { \
      |                 ^~~~~~~~~~~
kseq.h:163:2: note: in expansion of macro ‘__KS_TYPE’
  163 |  __KS_TYPE(type_t) \
      |  ^~~~~~~~~
kseq.h:255:2: note: in expansion of macro ‘KSTREAM_INIT2’
  255 |  KSTREAM_INIT2(SCOPE, type_t, __read, __seek, 16384) \
      |  ^~~~~~~~~~~~~
kseq.h:260:43: note: in expansion of macro ‘KSEQ_INIT2’
  260 | #define KSEQ_INIT(type_t, __read, __seek) KSEQ_INIT2(static, type_t, __read, __seek)
      |                                           ^~~~~~~~~~
sdict.c:42:1: note: in expansion of macro ‘KSEQ_INIT’
   42 | KSEQ_INIT(gzFile, gzread, gzseek)
      | ^~~~~~~~~
gcc -g -O0 -Wall -fno-strict-aliasing asset.c kalloc.c kopen.c sdict.c agp_to_fasta.c -o agp_to_fasta -L. -lm -lz
In file included from sdict.c:38:
sdict.c: In function ‘ks_seek’:
kseq.h:42:17: warning: no return statement in function returning non-void [-Wreturn-type]
   42 |  typedef struct __kstream_t { \
      |                 ^~~~~~~~~~~
kseq.h:163:2: note: in expansion of macro ‘__KS_TYPE’
  163 |  __KS_TYPE(type_t) \
      |  ^~~~~~~~~
kseq.h:255:2: note: in expansion of macro ‘KSTREAM_INIT2’
  255 |  KSTREAM_INIT2(SCOPE, type_t, __read, __seek, 16384) \
      |  ^~~~~~~~~~~~~
kseq.h:260:43: note: in expansion of macro ‘KSEQ_INIT2’
  260 | #define KSEQ_INIT(type_t, __read, __seek) KSEQ_INIT2(static, type_t, __read, __seek)
      |                                           ^~~~~~~~~~
sdict.c:42:1: note: in expansion of macro ‘KSEQ_INIT’
   42 | KSEQ_INIT(gzFile, gzread, gzseek)
      | ^~~~~~~~~
c-zhou commented 2 years ago

Hi @dpaudel,

These are some warnings. It would not cause any problems if the programs were successfully compiled. Did you find executables yahs, agp_to_fasta and juicer after compilation?

Best, Chenxi