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c-zhou / yahs

Yet another Hi-C scaffolding tool
MIT License
132 stars 19 forks source link

Aborted (core dumped) #56

Open FelidaeJia opened 1 year ago

FelidaeJia commented 1 year ago

I use a contig.fa (by Hifiasm) and a BED file (by Chromap) yahs version:1.2a.2 This is the problem yahs: cov.c:474: calc_cov_norms: Assertionk == div_ceil(p1, window)' failed. Aborted (core dumped)` so how to solve this problem

FelidaeJia commented 1 year ago

yahs: cov.c:474: calc_cov_norms: Assertion `k == div_ceil(p1, window)' failed. Aborted (core dumped)

c-zhou commented 1 year ago

Hello @FelidaeJia,

We see this error here https://github.com/c-zhou/yahs/issues/52. I will try to fix this and let you know.

Best, Chenxi

FelidaeJia commented 1 year ago

Thank you very much!

distilledchild commented 1 year ago

@c-zhou If I share my dataset, could you check what the problem is for core dump (Segmentation fault) please? I added an option for --no-contig-ec but it still happens. If you are OK, could you give me your email please?

Thanks!