c3g / GenPipes

GenPipes Read the Docs repository
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DNA Seq 7 protocols schema to be regenerated, debug log required #255

Closed shaloo closed 2 months ago

shaloo commented 5 months ago

@MareikeJaniak can u share the debug logs for these 7 protocols for the new dnaseq (tumor pair merged) in 5.0?

'germline_snv', 'germline_sv', 'germline_high_cov', 'somatic_tumor_only', 'somatic_fastpass', 'somatic_ensemble', 'somatic_sv'

MareikeJaniak commented 5 months ago

Hi Shaloo, See the attached files for the debug logs. "somatic_fastpass" is not included for now, because it gave me an error I need to investigate first.

Best, Mareike

dnaseq_germline_high_cov.debug.log dnaseq_germline_snv.debug.log dnaseq_germline_sv.debug.log dnaseq_somatic_ensemble.debug.log dnaseq_somatic_sv.debug.log dnaseq_somatic_tumor_only.debug.log

MareikeJaniak commented 5 months ago

The issue with dnaseq_somatic_fastpass is resolved, so here is the debug log for that last protocol:

dnaseq_somatic_fastpass.debug.log

shaloo commented 2 months ago

Updated and draft published for review here