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GenPipes Read the Docs repository
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Small fix for ampliconseq docs #275

Closed MareikeJaniak closed 2 weeks ago

MareikeJaniak commented 1 month ago

Hi Shaloo,

While you're updating the ampliconseq docs, I just noticed one small thing.

In the options for ampliconseq, the -t flag is no longer available, since there is only one protocol now. So this should be removed from the docs for v5:

-t {dada2}, --type {dada2}

                          AmpliconSeq analysis type (default=dada2)

Thanks!

shaloo commented 2 weeks ago

This is addressed - see here: https://genpipes.readthedocs.io/en/genpipes-v5.0.1/user_guide/pipelines/gp_ampliconseq.html