c5shen / WITCH

WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
GNU General Public License v3.0
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Experimental new GCM support #2

Closed RuneBlaze closed 2 years ago

RuneBlaze commented 2 years ago

This pull request attempts to incorporate a new experimental GCM implementation (that on two constraint alignments solves the MWT-AM problem exactly). This new GCM is alpha-quality and has only been tested within WITCH on 1000M{1,2}-HF.