updated alignment_tools.py to Python 3.11+

c5shen / WITCH

WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.

GNU General Public License v3.0

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updated alignment_tools.py to Python 3.11+ #6

Closed tiagonardi closed 1 year ago

tiagonardi commented 1 year ago

Two small corrections to remove deprecated parts:

replaced mapping import to collections.abc (Python 3.10+)
removed "open U mode" (Python 3.11+)

Now should run with more recent versions of Python (tested locally on Python 3.11.3), hopefully should still run on older Python versions (untested, sorry).

c5shen commented 1 year ago

Thanks! Merged with main.