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MSKCC cBio cluster documentation
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Please install gnu parallel #400

Closed lzamparo closed 8 years ago

lzamparo commented 8 years ago

Hey,

There are occasional times where parallelizing code is easier with gnu parallel, but it's not installed on Hal. Could you please install it?

Thanks,

tatarsky commented 8 years ago

Isn't /usr/bin/parallel GNU parallel? 

/usr/bin/parallel --version
WARNING: YOU ARE USING --tollef. IF THINGS ARE ACTING WEIRD USE --gnu.
GNU parallel 20130522
Copyright (C) 2007,2008,2009,2010,2011,2012,2013 Ole Tange and Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
GNU parallel comes with no warranty.

Web site: http://www.gnu.org/software/parallel

When using GNU Parallel for a publication please cite:

O. Tange (2011): GNU Parallel - The Command-Line Power Tool, 
;login: The USENIX Magazine, February 2011:42-47.

Are you seeing it missing somewhere? That is on the head node but I'll check the nodes.

lzamparo commented 8 years ago

huh, I guess it was not present on cc01?

Yep, just checked, and /usr/bin/parallel is present on the head node, but not cc01.

tatarsky commented 8 years ago

Ah, I will check that. Those nodes as mentioned in #397 were built solely via puppet (not the original ROCKS roll). I will add the rules to add the RPM.

tatarsky commented 8 years ago

Added the same RPM for now but will likely work with @nhgirija to check for a newer one to add to the local repo CBIO maintains.