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cBioPortal / cancerhotspots

Cancer Hotspots
GNU Affero General Public License v3.0
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Ensemble Transcript Support #54

Closed onursumer closed 7 years ago

onursumer commented 7 years ago

Added Ensemble transcript information for hotspot mutations, and made it possible to query hotspots by transcript id.

onursumer commented 7 years ago

In order for import pipeline to work properly, pipeline/src/main/resources/application.properties file should be updated with a line like this:

hotspot.transcript.uri=/cancerhotspots/pipeline/isoform_overrides_at_mskcc.txt

See https://github.com/mskcc/vcf2maf/blob/master/data/isoform_overrides_at_mskcc for the data source file.