cBioPortal / cbioportal

cBioPortal for Cancer Genomics
https://cbioportal.org
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Use NP consistently in download tab #10789

Open inodb opened 2 months ago

inodb commented 2 months ago

For mutations data it is currently listed as NS (not sequenced) instead of NP (not profiled), but for CNA and SV it shows NP. Not profiled and not sequenced are synonyms. See this link:

image

e.g. mut:

DY_ID   SAMPLE_ID   SOS1    EGFR
msk_impact_2017 P-0000901-T01-IM3   NS  WT

vs cna:

STUDY_ID    SAMPLE_ID   SOS1    EGFR
msk_impact_2017 P-0000901-T01-IM3   NP  0

vs SV:

STUDY_ID    SAMPLE_ID   SOS1    EGFR
msk_impact_2017 P-0000901-T01-IM3   NP  NA

Discussion point: should SV also show WT like mut?