cBioPortal / cbioportal

cBioPortal for Cancer Genomics
https://cbioportal.org
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Add validator check for data_gene_matrix.txt #10842

Open inodb opened 2 weeks ago

inodb commented 2 weeks ago

Add additional checks to the data_gene_matrix.txt file and _sequenced case list based on what's mentioned in the docs:

For each sample-profile combination, a gene panel should be specified. When the sample is not profiled on a gene panel, or if the sample is not profiled at all, use NA as value. If the sample is profiled for mutations, make sure it is also in the _sequenced case list.

Related files: