search

cBioPortal / cbioportal

cBioPortal for Cancer Genomics
https://cbioportal.org
GNU Affero General Public License v3.0
667 stars 534 forks source link

Data release issues #304

Closed jjgao closed 9 years ago

schultzn commented 9 years ago

Change

Cutaneous squamous cell carcinoma (Dana-Farber, Clin Cancer Res 2015) Target sequencing of 504 cancer-associated genes in 29 CSCC patients

to

Cutaneous Squamous Cell Carcinoma (DFCI, Clin Cancer Res 2015) Targeted sequencing of 504 cancer-associated genes in 29 cutaneous squamous cell carcinoma samples

schultzn commented 9 years ago

Change

Pediatric Ewing Sarcoma (Dana-Farber, Cancer Discov 2014) Whole exome sequencing of 96 pediatric Ewing Sarcoma tumors and 11 cell lines; raw data at

to

Pediatric Ewing Sarcoma (DFCI, Cancer Discov 2014) Whole exome sequencing of 96 pediatric Ewing Sarcoma tumors and 11 cell lines

schultzn commented 9 years ago

Change

Thymic epithelial tumors (NCI, Nat Genet 2014) Whole exome sequencing (WXS) of 28 thymic epithelial tumors; raw data at the

to

Thymic Epithelial Tumors (NCI, Nat Genet 2014) Whole exome sequencing of 28 thymic epithelial tumors

schultzn commented 9 years ago

Change

Microdissected Pancreatic Cancer Whole Exome Sequencing (UTSW, Nat Commun 2015) 109 micro-dissected pancreatic cancer cases and normal control tissue were subjected to whole-exome sequencing. Microdissection enriches tumor cellularity and enhances mutation calling.

to

Pancreatic Cancer (UTSW, Nat Commun 2015) Whole exome sequencing of 109 micro-dissected pancreatic cancer cases and normal control tissue.

schultzn commented 9 years ago

Change

Multiregion Sequencing of Clear-Cell Renal Cell Carcinoma (IRC, Nat Genet 2014) Mutation data from multi region exome sequencing (M-seq) of 10 clear cell renal carcinomas(ccRCCs)

to

Multiregion Sequencing of Clear-Cell Renal Cell Carcinoma (IRC, Nat Genet 2014) Mutation data from multi region exome sequencing of 10 clear cell renal cell carcinomas (ccRCCs)

schultzn commented 9 years ago

Primary sites of this study need to be standardized (upper/lower case issues): http://www.cbioportal.org/beta/study.do?cancer_study_id=es_iocurie_2014

schultzn commented 9 years ago

Was this study not supposed to have multiple samples per patient? http://www.cbioportal.org/beta/study.do?cancer_study_id=ccrcc_irc_2014

jjgao commented 9 years ago

Solved all the study name/description issues. Created separate tickets for the last issues.