Ally et al. Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

[ritikakundra]

https://www.sciencedirect.com/science/article/pii/S0092867417306396?via%3Dihub

Please keep this checklist for curation of a new study.

• [ ] create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• [ ] Document the curation process, e.g. how and by whom the data was transformed
• [ ] Follow the data checklist
• [ ] Create a pull request to datahub once the data is curated
• [ ] Push to triage portal
• [ ] Import into msk and public portal database
• [ ] Update the default quick select study list see https://github.com/cBioPortal/cbioportal/issues/5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
• [ ] Update cBioPortal news

[ritikakundra]

Also curate TERT promoter data available in table S3

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[yichaoS]

@ritikakundra Not sure if I understand correctly but we just need to add all the TERT data in this paper to exising lihc_pancan? Seems like everything else is already there.

• TERT CNA+ exp + fusion (table S3)

[yichaoS]

This issue is part of https://github.com/cBioPortal/datahub/issues/154

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.