Cancer studies updated in this pull request: ccle_broad_2023

checks

For all pull requests:

For a new study (in addition to above):

[ ] Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
[ ] is study meta data complete? e.g. pmid, group of PUBLIC
[ ] were all samples profiled with WES/WGS? If not, is gene panel file curated?
[ ] are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
[ ] clinical sample and patient data with meta files
[ ] mutations data with meta files
[ ] MAF is based on hg19
[ ] MAF with 2 isoforms: uniprot and mskcc
[ ] CNA data with meta files
[ ] CNA segment data with meta files
[ ] Expression data including z-scores with meta files
[ ] Case-lists for all profiles.
[ ] Manual checking (Niki or JJ): Triage or private Portal link here

cBioPortal / datahub