Open inodb opened 4 months ago
Hi @fedorov! Hope you are well! We attempted linking IDC's CT Scans to cBioPortal by IFraming in the OHIF Viewer URL, see this example:
If you think that looks good we can merge this PR, which would add them for all TCGA studies. I have some docs in the PR on how we created the linkage: https://github.com/cBioPortal/datahub/pull/2015/files#diff-8ec8f55b8f133448018149398fb361d844ab7005861b61056d4cf2cc79481f96. If you'd like to see some IDC branding we can also figure out how to best do that - thanks!
@inodb nice, very inventive reuse of IDC viewer!
I do have a couple of suggestions:
idc-index
package that aims to simplify access to IDC data: https://github.com/ImagingDataCommons/idc-indexAlso, did you know you can embed IDC viewer in the colab notebook output cell? You can see an example here: https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/analysis/MedSAM_with_IDC.ipynb.
Add OHIF Viewer for all TCGA pancan studies. Add docs of how they were generated: https://github.com/cBioPortal/datahub/pull/2015/files?short_path=8ec8f55#diff-8ec8f55b8f133448018149398fb361d844ab7005861b61056d4cf2cc79481f96