search

cBioPortal / datahub

A centralized location for storing curated data from cBioPortal
168 stars 119 forks source link

any question for get the genepanel list from datahub #2047

Closed Winteric123 closed 3 weeks ago

Winteric123 commented 1 month ago

dear contributors of datahub, i am a users of cbiopotral, and i just want to get gene_panels from datahub, i has something wrong when i run the code "git lfs pull -I public/brca_tcga",it suggest the error "batch response::This repository is over its data quota. Account responsible for LFS bandwidth should purchase more data packs to restore access."and i could not download the genepanel list from datahub.i think maybe your LFS do not have enough room for this repository or it is my wrong steps to get the genepanel list from datahub.hope u can solve my problem quickly!!!

Winteric123 commented 1 month ago

and i also find it difficult to get the genepanel list only through the website https://github.com/cBioPortal/datahub/tree/master/reference_data/gene_panels since i can copy it last week through the website.

steady137 commented 3 weeks ago

This seems to still be a problem. Is there an alternate location to download gene panels in the correct format for importing?

rmadupuri commented 3 weeks ago

Hey @Winteric123, @steady137, sorry for the inconvenience. Can you give it a try now?

steady137 commented 3 weeks ago

Working again, thanks! datahub/reference_data/gene_panels on master ❯ git lfs pull -I data_gene_panel_metabric_173.txt Downloading LFS objects: 100% (1/1), 1.2 KB | 0 B/s