Grinfeld et al. Classification and Personalized Prognosis in Myeloproliferative Neoplasms. NEJM 2018.

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Grinfeld et al. Classification and Personalized Prognosis in Myeloproliferative Neoplasms. NEJM 2018. #395

Closed jjgao closed 4 months ago

jjgao commented 6 years ago

"Targeted sequencing for the full coding sequence of 69 genes and genomewide copy-number information was undertaken in 1887 patients"

PMID: 30304655

https://www.ncbi.nlm.nih.gov/pubmed/30304655

[x] create a issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
[ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
[ ] Document the curation process, e.g. how and by whom the data was transformed
[ ] Follow the data checklist
[ ] Create a pull request to datahub once the data is curated
[ ] Push to triage portal
[ ] Import into msk and public portal database
[ ] Update cBioPortal news

stale[bot] commented 4 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

yichaoS commented 4 years ago

@jjgao @ritikakundra The mutation data is provided in PDF form in the supplemental. Sent the author an email to request mutation data in csv/txt format, CNA data and survival data.

jjgao commented 3 years ago

@yichaoS has the author responded?

yichaoS commented 3 years ago

@jjgao Sorry for being so over-due. Sent author another email just now.

yichaoS commented 3 years ago

Data Availability:

Gene Panel: Table S1
Mutation data: Table S4 (many pages in PDF, not curate-able, email author for CSV format)

Key data that's missing (emailed author)

CNA
Survival

yichaoS commented 3 years ago

Got reply from jn5@sanger.ac.uk on Jun 1, 2021:

I can send the supplemental data through as an excel document - I'll endeavour to do so this week. Would be great to have it included in cbioportal.

stale[bot] commented 2 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.