Closed jjgao closed 7 months ago
@jjgao: @sbabyanusha presented this paper at our journal club yesterday and she identified that there's no MAF provided along with publication.
@yichaoS @sbabyanusha @ritikakundra can we try to contact the author?
@jjgao We were about to email the author, then noticed that, seems like the paper is using the same 34 patient set (@sbabyanusha doubled checked the list in clinical supplemental) and re-using sequencing data for analysis from a previous published study: https://science.sciencemag.org/content/348/6230/124. The other paper seems to have the complete sequencing data with coordinates&allele. We will try to curate this study (not the ref study) then in next (or soon) scrum. @ritikakundra @sbabyanusha @rmadupuri
@jjgao me and @sbabyanusha took another closer look at the study, and realized there are 4 parts of the cohort
European Genome-phenome Archive
. (ref 8, 9)We're going to email the author to ask for the MAF of the 7 patients.
Thanks @yichaoS @BabyASatravada . I didn't realize they only have 7 new patients. In that case, I should deprioritize this one if it's hard to get the data.
Emailed the author for the MAF of the 7 primary NSCLC patients.
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.
Sicne it's only 7 patients, maybe we should just close this ticket, esp if the author hasn't responded..
Replied by Charles Swanton (charles.swanton@crick.ac.uk) on 8/25/2020:
I am sure we can provide this information asap
Nicky(nicholas.mcgranahan@crick.ac.uk) and Mariam(m.jamal-hanjani@ucl.ac.uk) are cc’ed who will know where these data are
Followed up on 6/1/2021
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.
This issue is being closed as we couldn't get a response from the author.
https://www.ncbi.nlm.nih.gov/pubmed/26940869