Lee et al. Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma. Cell 2019.

[jjgao]

https://www.cell.com/cell/fulltext/S0092-8674(19)30511-2#%20

• [ ] create a issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• [ ] Document the curation process, e.g. how and by whom the data was transformed
• [ ] Follow the data checklist
• [ ] Create a pull request to datahub once the data is curated
• [ ] Push to triage portal
• [ ] Import into msk and public portal database
• [ ] Update cBioPortal news

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[rmadupuri]

Cohort Stats: 138 cases - 49 newly sequenced and 89 publicly available cases (also includes a few TCGA Lung Adenocarcinoma cases) - data analyzed in a unified pipeline

Data Availability: Clinical - Table S1, S5, S7 SV's, MAF (in VCF format), RNA-seq, pathology findings, mutational signatures are available here: http://genome.kaist.ac.kr/

Issue: Data in http://genome.kaist.ac.kr/ can only be downloaded per sample/gene individually and variants in VCF format.

Status: Emailed author (May 26, 2021) if they could share the complete genomic data per profile.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[sbabyanusha]

This issue is being closed as we couldn't get a response from the author.