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cBioPortal / datahub

A centralized location for storing curated data from cBioPortal
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Include RNA-seq data in MET500 study #761

Closed yichaoS closed 3 years ago

yichaoS commented 5 years ago

public portal link: https://www.cbioportal.org/study/summary?id=metastatic_solid_tumors_mich_2017

stale[bot] commented 4 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

sbabyanusha commented 3 years ago

@yichaoS I have investigated on this and the data is not reported in the supplementary files but available in Xena browser. The paper says that the reads are aligned to GRCh38 build. I will try emailing the author to know whether they can provide the data aligned to GRCh37 build if possible.

jjgao commented 3 years ago

@sbabyanusha For expression data, I don't think we need to worry about genome build since we are not storing any genomic locations.