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cBioPortal
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gdc-et-pipeline
GSoC : Spring-batch based system to extract and transform GDC hosted data to suitable cBioPortal file formats.
GNU Affero General Public License v3.0
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Bump jackson-databind from 2.2.1 to 2.12.7.1
#46
dependabot[bot]
opened
1 year ago
0
Bump jackson-databind from 2.2.1 to 2.13.4.1
#45
dependabot[bot]
closed
1 year ago
1
Bump jackson-databind from 2.2.1 to 2.12.6.1
#44
dependabot[bot]
closed
2 years ago
1
Bump gson from 2.8.5 to 2.8.9
#43
dependabot[bot]
opened
2 years ago
0
Bump h2 from 1.3.156 to 2.1.210
#42
dependabot[bot]
opened
2 years ago
0
Bump h2 from 1.3.156 to 2.0.206
#41
dependabot[bot]
closed
2 years ago
1
Bump jackson-databind from 2.2.1 to 2.9.10.8
#40
dependabot[bot]
closed
2 years ago
1
Bump commons-io from 2.4 to 2.7
#39
dependabot[bot]
opened
3 years ago
0
Bump jackson-databind from 2.2.1 to 2.9.10.7
#38
dependabot[bot]
closed
2 years ago
1
Bump jackson-databind from 2.2.1 to 2.9.10.4
#37
dependabot[bot]
closed
3 years ago
1
Bump jackson-databind from 2.2.1 to 2.9.10.3
#36
dependabot[bot]
closed
4 years ago
1
Update README.md
#35
zheins
closed
5 years ago
0
Tidying up work over summer
#34
zheins
closed
5 years ago
0
Pipeline QC comments
#33
ao508
opened
5 years ago
0
Use POST to genome nexus to annotate entire maf at once
#32
zheins
opened
5 years ago
0
Fixes for mutation step
#31
zheins
closed
5 years ago
0
Clinical metadata fetch from external source
#30
zheins
opened
5 years ago
0
Adding metadata files for CNA + Expression
#29
zheins
closed
5 years ago
0
Expression data step
#28
zheins
closed
5 years ago
0
CNA processor ENSG -> Hugo
#27
zheins
opened
5 years ago
1
CNA datatype addition
#26
zheins
closed
5 years ago
0
Mutation step fails on annotation
#25
zheins
opened
5 years ago
0
Clinical file data dictionary integration
#24
zheins
opened
5 years ago
0
Use GDC graphql endpoint for clinical data
#23
zheins
closed
5 years ago
1
bring in genome nexus dependency with jitpack
#22
ao508
opened
5 years ago
0
Fixes for incompatible dependencies
#21
zheins
closed
5 years ago
0
Set a static version for gson
#20
zheins
closed
5 years ago
0
gsoc-development into master
#19
ao508
closed
5 years ago
0
Pull GN annotator in with jitpack
#18
ao508
closed
5 years ago
0
Fix file extraction
#17
ao508
closed
5 years ago
0
Use open source library for deleting directory
#16
ao508
opened
5 years ago
0
Added optional/required tags for options list
#15
DixitPatel
closed
5 years ago
0
Running the batch documentation
#14
n1zea144
opened
6 years ago
1
Fix file extraction
#13
DixitPatel
closed
5 years ago
2
Annotate mutation data
#12
DixitPatel
closed
5 years ago
0
Annotate mutation data
#11
DixitPatel
closed
7 years ago
0
Create README.md
#10
DixitPatel
closed
7 years ago
0
Annotate mutation data
#9
DixitPatel
closed
7 years ago
0
Fix file extraction
#8
DixitPatel
closed
7 years ago
0
Fix file extraction
#7
DixitPatel
closed
7 years ago
1
Refactor identical variant check
#6
DixitPatel
closed
7 years ago
1
Add Mutation data flow
#5
DixitPatel
closed
7 years ago
0
Added manifest file processing. Added file extraction
#4
DixitPatel
closed
7 years ago
0
Use manifest file for processing
#3
DixitPatel
closed
7 years ago
2
Gsoc development
#2
DixitPatel
closed
7 years ago
2
Initial code for Clinical Job. Working on XML Mapper
#1
DixitPatel
closed
7 years ago
1