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cBioPortal / icebox

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feature request: add column 'reference trinucleotide' to patient view #308

Open ndfriedman opened 4 years ago

ndfriedman commented 4 years ago

If possible it would be very useful to have an additional column in the patient view that lists the reference trinucleotide (ie TCT) of alls SNPs in the tumor. This would be useful for assigning mutations to mutation signatures that likely caused them. Alternatively you could have a column which combines the mutation trinucleotide and mutation information (ie T(C>A)T).

jjgao commented 4 years ago

@ndfriedman Thanks for the feature request. It's a great idea. We are working on visualizing mutational signature data and will consider this as part of the feature.

stale[bot] commented 4 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

inodb commented 4 years ago

We have a field for this in the response (nucleotideContext)

stale[bot] commented 4 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

jjgao commented 4 years ago

It would be good to add this to the mutations table.

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] commented 2 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] commented 2 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.